MolNFT v1 · #170584 · protein
Crystal structure of the steady-state activated state of the light- driven sodium pump KR2 in the pentameric form at room temperature, pH 8.0
6YC4: “Crystal structure of the steady-state activated state of the light- driven sodium pump KR2 in the pentameric…”. X-ray diffraction, 4 ligands (LFA, OLA, RET). MolNFT v1 #170584 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6YC4
- Type
- protein
- Length
- 1,345 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- N0DKS8
- Ligands
- LFA, OLA, RET, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | — | protein | 269 | — | N0DKS8 |
Ligands and binding sites
- LFA · Eicosane · ligand · 21 copies · chains A, B, C, D, E
- OLA · Oleic acid · ligand · 8 copies · chains B, A, C, D, E
- RET · Retinal · ligand · 5 copies · chains A, B, C, D, E
- NA · Sodium ion · metal · 10 copies · chains A, B, C, D, E
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 28 copies · chains A, B, E, C, D
- GOL · Glycerol · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YC4 · Crystal structure of the steady-state activated state of the light-driven sodium pump KR2… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt N0DKS8
- Elsewhere: RCSB PDB 6YC4 · PDBe 6YC4 · UniProt N0DKS8
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