MolNFT v1 · #170569 · protein
Propionyl-CoA carboxylase of methylorubrum extorquens with bound CoA
6YBP: “Propionyl-CoA carboxylase of methylorubrum extorquens with bound CoA”. Electron microscopy, 2 ligands (COA, BTI). MolNFT v1 #170569 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YBP
- Type
- protein
- Length
- 4,702 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C5AP75, C5AWU5
- Ligands
- COA, BTI
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | protein | 506 | — | C5AP75 |
| G | — | protein | 283 | — | C5AWU5 |
| H | — | protein | 208 | — | C5AWU5 |
| I | — | protein | 288 | — | C5AWU5 |
| J | — | protein | 303 | — | C5AWU5 |
| K | — | protein | 293 | — | C5AWU5 |
| L | — | protein | 291 | — | C5AWU5 |
Ligands and binding sites
- COA · Coenzyme A · ligand · 6 copies · chains A, B, C, D, E, F
- BTI · 5-(hexahydro-2-oxo-1H-thieno[3,4-d]imidazol-6-yl) pentanal · ligand · 6 copies · chains A, B, G, C, D, H, E, I, J, F, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YBP · Propionyl-CoA carboxylase of Methylorubrum extorquens with bound CoA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5AP75
- Every structure of UniProt C5AWU5
- Elsewhere: RCSB PDB 6YBP · PDBe 6YBP · UniProt C5AP75 · UniProt C5AWU5
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