MolNFT v1 · #170472 · protein

Fragment bikinin bound to interleukin 1 beta

6Y8M: “Fragment bikinin bound to interleukin 1 beta”. X-ray diffraction, 2 ligands (SX2, SO4). MolNFT v1 #170472 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Y8M
Type: protein
Length: 149 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01584
Ligands: SX2, SO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	149	—	P01584

Ligands and binding sites

SX2 · 4-[(5-bromopyridin-2-yl)amino]-4-oxobutanoic acid · ligand · 2 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6Y8M · Fragment bikinin bound to Interleukin 1 beta · the same entry in another collection · chain A against A, TM-score 1.00
P01584 · AlphaFold monomer V2.0 prediction for interleukin-1 beta (P01584) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01584
Elsewhere: RCSB PDB 6Y8M · PDBe 6Y8M · UniProt P01584

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