MolNFT v1 · #170469 · protein

Fragment KCL_I013 in complex with il-1-beta

6Y8I · Interleukin-1 beta: “Fragment KCL_I013 in complex with il-1-beta”. X-ray diffraction, 2 ligands (OGE, SO4). MolNFT v1 #170469 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Y8I
Type: protein
Length: 147 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Interleukin-1 beta
UniProt: P01584
Ligands: OGE, SO4

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Interleukin-1 beta	protein	147	6% helix, 50% strand	P01584

Ligands and binding sites

OGE · 1-(5-bromanylpyridin-2-yl)-3-(2-hydroxyethyl)urea · ligand · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6Y8I · Fragment KCL_I013 in complex with IL-1-beta · the same entry in another collection · chain A against A, TM-score 1.00
P01584 · AlphaFold monomer V2.0 prediction for interleukin-1 beta (P01584) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01584
Elsewhere: RCSB PDB 6Y8I · PDBe 6Y8I · UniProt P01584

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