MolNFT v1 · #170438 · protein
Structure of the BRD9 bromodomain and compound 27
6Y7K · Bromodomain-containing protein 9: “Structure of the BRD9 bromodomain and compound 27”. X-ray diffraction, 2 ligands (OEZ, NA), 1 pocket (best druggability 0.52). MolNFT v1 #170438 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6Y7K
- Type
- protein
- Length
- 114 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bromodomain-containing protein 9
- UniProt
- Q9H8M2
- Ligands
- OEZ, NA
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bromodomain-containing protein 9 | protein | 114 | 63% helix, 0% strand | Q9H8M2 |
Ligands and binding sites
- OEZ · ~{N}-cyclobutyl-3-(6-ethanoylpyrrolo[1,2-a]pyrimidin-8-yl)-4-methoxy-benzamide · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.52 | 0.82 | 18 | OEZ |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H8M2
- Elsewhere: RCSB PDB 6Y7K · PDBe 6Y7K · UniProt Q9H8M2
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