MolNFT v1 · #170434 · protein

Structure of the human RAB3C in complex with GDP

6Y7G: “Structure of the human RAB3C in complex with GDP”. X-ray diffraction, 2 ligands (GDP, MG). MolNFT v1 #170434 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Y7G
Type: protein
Length: 324 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q96E17
Ligands: GDP, MG

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	159	—	Q96E17
B	—	protein	165	—	Q96E17

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · 2 copies · chains A, B
BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6Y7G · Structure of the human RAB3C in complex with GDP · the same entry in another collection · chain A against A, TM-score 1.00
Q96E17 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-3C (Q96E17) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96E17
Elsewhere: RCSB PDB 6Y7G · PDBe 6Y7G · UniProt Q96E17

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