MolNFT v1 · #170397 · protein
TREM2 extracellular domain (19-174) in complex with single-chain variable fragment (scfv-4)
6Y6C: “TREM2 extracellular domain (19-174) in complex with single-chain variable fragment (scfv-4)”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #170397 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y6C
- Type
- protein
- Length
- 693 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NZC2
- Ligands
- NAG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 118 | — | Q9NZC2 |
| C | — | protein | 228 | — | — |
| D | — | protein | 229 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y6C · TREM2 extracellular domain (19-174) in complex with single-chain variable fragment… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NZC2 · AlphaFold monomer V2.0 prediction for triggering receptor expressed on myeloid cells 2… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NZC2
- Elsewhere: RCSB PDB 6Y6C · PDBe 6Y6C · UniProt Q9NZC2
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