MolNFT v1 · #170382 · protein

Ring-dtc domain of DELTEX1 bound to NAD

6Y5P: “Ring-dtc domain of DELTEX1 bound to NAD”. X-ray diffraction, 2 ligands (NAD, ZN). MolNFT v1 #170382 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Y5P
Type: protein
Length: 457 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q86Y01
Ligands: NAD, ZN

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	228	—	Q86Y01
B	—	protein	229	—	Q86Y01

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · 2 copies · chains A, B
ZN · Zinc ion · metal · 4 copies · chains A, B
EDO · 1,2-ethanediol · additive · 8 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6Y5P · RING-DTC domain of Deltex1 bound to NAD · the same entry in another collection · chain A against A, TM-score 1.00
Q86Y01 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase DTX1 (Q86Y01) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q86Y01
Elsewhere: RCSB PDB 6Y5P · PDBe 6Y5P · UniProt Q86Y01

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.