MolNFT v1 · #170266 · protein
Mouse serotonin 5HT3 receptor in complex with palonosetron
6Y1Z: “Mouse serotonin 5HT3 receptor in complex with palonosetron”. Electron microscopy, 3 ligands (O7B, NAG, BMA). MolNFT v1 #170266 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y1Z
- Type
- protein
- Length
- 1,930 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8K1F4
- Ligands
- O7B, NAG, BMA
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, B, C, E | — | protein | 386 | — | Q8K1F4 |
Ligands and binding sites
- O7B · (3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one · ligand · 5 copies · chains A, B, D, E, C
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 25 copies · chains A, D, B, C, E
- BMA · beta-D-mannopyranose · sugar · 5 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y1Z · Mouse serotonin 5HT3 receptor in complex with palonosetron · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8K1F4
- Elsewhere: RCSB PDB 6Y1Z · PDBe 6Y1Z · UniProt Q8K1F4
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