MolNFT v1 · #170120 · protein
Arabidopsis thaliana casein kinase 2 (CK2) alpha-1 crystal form III
6XX9 · Casein kinase II subunit alpha-1: “Arabidopsis thaliana casein kinase 2 (CK2) alpha-1 crystal form III”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.68). MolNFT v1 #170120 on GenesisL1: 3D structure, binding…
- PDB
- 6XX9
- Type
- protein
- Length
- 326 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Casein kinase II subunit alpha-1
- EC
- 2.7.11.1
- UniProt
- Q08467
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Casein kinase II subunit alpha-1 (EC 2.7.11.1) | protein | 326 | 43% helix, 15% strand | Q08467 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 396 | 0.68 | 0.80 | 54 | empty |
Compared structures
- 6XX9 · Arabidopsis thaliana Casein Kinase 2 (CK2) alpha-1 crystal form III · the same entry in another collection · chain A against A, TM-score 1.00
- Q08467 · AlphaFold monomer V2.0 prediction for casein kinase II subunit alpha-1 (Q08467) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08467
- Elsewhere: RCSB PDB 6XX9 · PDBe 6XX9 · UniProt Q08467
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