MolNFT v1 · #169986 · protein
The structure of the M60 catalytic domain from clostridium perfringens zmpc in complex the sialyl T antigen
6XT1: “The structure of the M60 catalytic domain from clostridium perfringens zmpc in complex the sialyl T antigen”. X-ray diffraction, 4 ligands (A2G, GAL, SIA). MolNFT v1 #169986 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6XT1
- Type
- protein
- Length
- 2,040 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F8UNJ8
- Ligands
- A2G, GAL, SIA, ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 511 | — | F8UNJ8 |
| B | — | protein | 510 | — | F8UNJ8 |
| C | — | protein | 509 | — | F8UNJ8 |
| D | — | protein | 510 | — | F8UNJ8 |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · 2 copies · chains A, B
- GAL · beta-D-galactopyranose · sugar · 2 copies
- SIA · N-acetyl-alpha-neuraminic acid · sugar · 2 copies · chains A, B
- ZN · Zinc ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 16 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XT1 · The structure of the M60 catalytic domain from Clostridium perfringens ZmpC in complex… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F8UNJ8
- Elsewhere: RCSB PDB 6XT1 · PDBe 6XT1 · UniProt F8UNJ8
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