MolNFT v1 · #169959 · protein
Crystal structure of chaetomium thermophilum VPS29 complexed with rapid-derived cyclic peptide rt-D3
6XS8: “Crystal structure of chaetomium thermophilum VPS29 complexed with rapid-derived cyclic peptide rt-D3”. X-ray diffraction, 1 ligand (48V). MolNFT v1 #169959 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XS8
- Type
- protein
- Length
- 196 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- G0RZB5
- Ligands
- 48V
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 184 | — | G0RZB5 |
| B | — | protein | 12 | — | — |
Ligands and binding sites
- 48V · {[(2R)-2,3-diamino-3-oxopropyl]sulfanyl}acetic acid · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XS8 · Crystal structure of Chaetomium thermophilum Vps29 complexed with RaPID-derived cyclic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0RZB5
- Elsewhere: RCSB PDB 6XS8 · PDBe 6XS8 · UniProt G0RZB5
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