MolNFT v1 · #169947 · protein
Cryo-EM structure of shiv-elicited RHA1.V2.01 in complex with HIV-1 env BG505 ds-SOSIP.664
6XRT: “Cryo-EM structure of shiv-elicited RHA1.V2.01 in complex with HIV-1 env BG505 ds-SOSIP.664”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #169947 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XRT
- Type
- protein
- Length
- 1,947 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | protein | 446 | — | Q2N0S6 |
| B | — | protein | 124 | — | Q2N0S6 |
| E | — | protein | 446 | — | Q2N0S6 |
| F | — | protein | 445 | — | Q2N0S6 |
| C | — | protein | 126 | — | Q2N0S6 |
| A | — | protein | 122 | — | Q2N0S6 |
| H | — | protein | 133 | — | — |
| L | — | protein | 105 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 76 copies · chains G, H, E, L, F, B, C, A
- MAN · alpha-D-mannopyranose · sugar · 16 copies · chains H, E, F, L
- BMA · beta-D-mannopyranose · sugar · 8 copies · chains H, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XRT · Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP.664 · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6XRT · PDBe 6XRT · UniProt Q2N0S6
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