MolNFT v1 · #169896 · protein
Receptor for advanced glycation end products VC1 domain in complex with fragments 1 & 13
6XQ9: “Receptor for advanced glycation end products VC1 domain in complex with fragments 1 & 13”. X-ray diffraction, 2 ligands (V6S, V6M). MolNFT v1 #169896 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XQ9
- Type
- protein
- Length
- 424 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q15109
- Ligands
- V6S, V6M
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 212 | — | Q15109 |
Ligands and binding sites
- V6S · 4-(3-hydroxyphenoxy)benzoic acid · ligand · 4 copies · chains A, B
- V6M · 7-methyl-3-phenyl-1H-indole-2-carboxylic acid · ligand · 2 copies · chains A, B
- ACT · Acetate ion · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XQ9 · Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 13 · the same entry in another collection · chain A against A, TM-score 1.00
- Q15109 · AlphaFold monomer V2.0 prediction for advanced glycosylation end product-specific… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15109
- Elsewhere: RCSB PDB 6XQ9 · PDBe 6XQ9 · UniProt Q15109
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