MolNFT v1 · #169801 · protein
Crystal structure of the PDZ domain of human gopc in complex with a peptide of E. COLI O157:H7 str. sakai effector NLEG8
6XNJ: “Crystal structure of the PDZ domain of human gopc in complex with a peptide of E. COLI O157:H7 str. sakai…”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #169801 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XNJ
- Type
- protein
- Length
- 95 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9HD26
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 87 | — | Q9HD26 |
| B | — | protein | 8 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XNJ · Crystal structure of the PDZ domain of human GOPC in complex with a peptide of E. coli… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HD26 · AlphaFold monomer V2.0 prediction for golgi-associated PDZ and coiled-coil… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HD26
- Elsewhere: RCSB PDB 6XNJ · PDBe 6XNJ · UniProt Q9HD26
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