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Crystal structure of the PDZ domain of human gopc in complex with a peptide of E. COLI O157:H7 str. sakai effector NLEG8

Analyse Crystal structure of the PDZ domain of human gopc in complex with a peptide of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6XNJ
Type: protein
Length: 95 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Golgi-associated PDZ and coiled-coil motif-containing protein; NLEG8 peptide
UniProt: Q9HD26
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 18% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Golgi-associated PDZ and coiled-coil motif-containing protein	protein	87	20% helix, 44% strand	Q9HD26
B	NLEG8 peptide	protein	8	0% helix, 25% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 502 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

6XNJ · Crystal structure of the PDZ domain of human GOPC in complex with a peptide of E. coli… · the same entry in another collection · chain A against A, TM-score 1.00
Q9HD26 · AlphaFold monomer V2.0 prediction for golgi-associated PDZ and coiled-coil… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9HD26
Elsewhere: RCSB PDB 6XNJ · PDBe 6XNJ · UniProt Q9HD26

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