MolNFT v1 · #169758 · protein
Crystal structure of dca-S bound to co-LSD4 from sphingobium sp. strain syk-6
6XM7: “Crystal structure of dca-S bound to co-LSD4 from sphingobium sp. strain syk-6”. X-ray diffraction, 3 ligands (V5M, CO, MG). MolNFT v1 #169758 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XM7
- Type
- protein
- Length
- 488 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- G2IQT9
- Ligands
- V5M, CO, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 488 | — | G2IQT9 |
Ligands and binding sites
- V5M · (2E)-3-{4-hydroxy-3-[(E)-2-(4-hydroxy-3-methoxyphenyl) ethenyl]-5-methoxyphenyl}prop-2-enoic acid · ligand · chains A
- CO · Cobalt (II) ion · metal · 5 copies · chains A
- MG · Magnesium ion · metal
- DMS · Dimethyl sulfoxide · additive · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XM7 · Crystal structure of DCA-S bound to Co-LSD4 from Sphingobium sp. strain SYK-6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G2IQT9
- Elsewhere: RCSB PDB 6XM7 · PDBe 6XM7 · UniProt G2IQT9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.