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Ligand · V5M

V5M · (2E)-3-{4-hydroxy-3-[(E)-2-(4-hydroxy-3-methoxyphenyl) ethenyl]-5-methoxyphenyl}prop-2-enoic acid

V5M, (2E)-3-{4-hydroxy-3-[(E)-2-(4-hydroxy-3-methoxyphenyl) ethenyl]-5-methoxyphenyl}prop-2-enoic acid (C19 H18 O6, 342.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
V5M
Formula
C19 H18 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

V5M in 2 structures; the first of them:

  • 6XM7 · Crystal structure of DCA-S bound to Co-LSD4 from Sphingobium sp. strain SYK-6 · V5M A501 · binds PRO45, PHE59, TYR101, ARG102, ASN120, THR121, LYS134, GLU135 and 17 more
  • 6XM7 · Crystal structure of dca-S bound to co-LSD4 from sphingobium sp. strain syk-6 · V5M A501 · binds PHE59, TYR101, ASN120, THR121, LYS134, GLU135, MET216, HIS218 and 13 more

Residues it binds most

PHE 2, MET 2, GLU 2, HIS 2, SER 2, ALA 2, ASN 2, GLY 1, LEU 2, LYS 2 (residue and the binding sites it lines).

Found with

  • CO · Cobalt (II) ion
  • MG · Magnesium ion
  • DMS · Dimethyl sulfoxide

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