MolNFT v1 · #169645 · protein
Crystal structure of the carbohydrate recognition domain of the human macrophage galactose C-type lectin bound to methyl 2-(acetylamino)-2- deoxy-1-thio-alpha-D-galactopyranose
6XIY · C-type lectin domain family 10 member a: “Crystal structure of the carbohydrate recognition domain of the human macrophage galactose C-type lectin…”. X-ray diffraction, 3 ligands (Q3M, CA, CL). MolNFT v1 #169645 on GenesisL1: 3D…
- PDB
- 6XIY
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C-type lectin domain family 10 member a
- UniProt
- Q8IUN9
- Ligands
- Q3M, CA, CL
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C-type lectin domain family 10 member a | protein | 129 | 15% helix, 28% strand | Q8IUN9 |
Ligands and binding sites
- Q3M · Methyl 2-(acetylamino)-2-deoxy-1-thio-alpha-D-galactopyranose · ligand · chains A
- CA · Calcium ion · metal · 3 copies · chains A
- CL · Chloride ion · ion · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 6XIY · Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8IUN9 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 10 member a (Q8IUN9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IUN9
- Elsewhere: RCSB PDB 6XIY · PDBe 6XIY · UniProt Q8IUN9
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