MolNFT v1 · #169627 · protein
Refinement of glucose isomerase from streptomyces albus at 1.65 ångströms with data from an imaging plate
6XIA · D-xylose isomerase: “Refinement of glucose isomerase from streptomyces albus at 1.65 ångströms with data from an imaging plate”. X-ray diffraction, 4 pockets (best druggability 0.72). MolNFT v1 #169627 on GenesisL1: 3D structure…
- PDB
- 6XIA
- Type
- protein
- Length
- 387 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-xylose isomerase
- EC
- 5.3.1.5
- UniProt
- P24299
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-xylose isomerase (EC 5.3.1.5) | protein | 387 | 50% helix, 10% strand | P24299 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.72 | 0.99 | 23 | empty |
| 2 | 475 | 0.65 | 0.77 | 46 | empty |
| 3 | 81 | 0.47 | 0.82 | 13 | empty |
| 4 | 76 | 0.31 | 0.73 | 20 | empty |
Compared structures
- 6XIA · Refinement of glucose isomerase from streptomyces albus at 1.65 ångströms with data from… · the same entry in another collection · chain A against A, TM-score 1.00
- P24299 · AlphaFold monomer V2.0 prediction for xylose isomerase (P24299) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24299
- Elsewhere: RCSB PDB 6XIA · PDBe 6XIA · UniProt P24299
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