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Refinement of glucose isomerase from streptomyces albus at 1.65 ångströms with data from an imaging plate

Analyse Refinement of glucose isomerase from streptomyces albus at 1.65 ångströms with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6XIA
Type: protein
Length: 387 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-xylose isomerase
EC: 5.3.1.5
UniProt: P24299
Pockets: 4 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-xylose isomerase (EC 5.3.1.5)	protein	387	50% helix, 10% strand	P24299

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.72	0.99	23	empty
2	475	0.65	0.77	46	empty
3	81	0.47	0.82	13	empty
4	76	0.31	0.73	20	empty

Compared structures

6XIA · Refinement of glucose isomerase from streptomyces albus at 1.65 ångströms with data from… · the same entry in another collection · chain A against A, TM-score 1.00
P24299 · AlphaFold monomer V2.0 prediction for xylose isomerase (P24299) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24299
Elsewhere: RCSB PDB 6XIA · PDBe 6XIA · UniProt P24299

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