MolNFT v1 · #169491 · protein
Carbonmonoxy hemoglobin in complex with the antisickling agent methyl 5-((2-formyl-4-METHOXYPHENOXY)METHYL)PICOLINATE
6XDT: “Carbonmonoxy hemoglobin in complex with the antisickling agent methyl…”. X-ray diffraction, 3 ligands (HEM, V1M, CMO). MolNFT v1 #169491 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XDT
- Type
- protein
- Length
- 574 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P69905, P68871
- Ligands
- HEM, V1M, CMO
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 141 | — | P69905 |
| B, D | — | protein | 146 | — | P68871 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, B, C, D
- V1M · methyl 5-[(4-methoxy-2-methylphenoxy)methyl]pyridine-2-carboxylate · ligand · 2 copies · chains A, C
- CMO · Carbon monoxide · ion · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XDT · Carbonmonoxy hemoglobin in complex with the antisickling agent methyl… · the same entry in another collection · chain D against D, TM-score 1.00
- P68871 · AlphaFold monomer V2.0 prediction for hemoglobin subunit beta (P68871) · a predicted model of the same protein · chain D against A, TM-score 0.98
- P69905 · AlphaFold monomer V2.0 prediction for hemoglobin subunit alpha (P69905) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69905
- Every structure of UniProt P68871
- Elsewhere: RCSB PDB 6XDT · PDBe 6XDT · UniProt P69905 · UniProt P68871
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