MolNFT v1 · #169370 · protein
HIV-1 envelope glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab
6X9T: “HIV-1 envelope glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #169370 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X9T
- Type
- protein
- Length
- 786 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 432 | — | Q2N0S6 |
| B | — | protein | 121 | — | Q2N0S6 |
| H | — | protein | 124 | — | — |
| L | — | protein | 109 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 27 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar
- MAN · alpha-D-mannopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X9T · HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6X9T · PDBe 6X9T · UniProt Q2N0S6
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