MolNFT v1 · #169367 · protein
2-deoxyribose-bound structure of marinomonas primoryensis PA14 carbohydrate-binding domain
6X9P · Antifreeze protein: “2-deoxyribose-bound structure of marinomonas primoryensis PA14 carbohydrate-binding domain”. X-ray diffraction, 2 ligands (UZJ, CA). MolNFT v1 #169367 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6X9P
- Type
- protein
- Length
- 182 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Antifreeze protein
- UniProt
- A1YIY3
- Ligands
- UZJ, CA
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Antifreeze protein | protein | 182 | 12% helix, 45% strand | A1YIY3 |
Ligands and binding sites
- UZJ · 2-deoxy-beta-D-ribopyranose · ligand · chains A
- CA · Calcium ion · metal · 5 copies · chains A
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X9P · 2-deoxyribose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1YIY3
- Elsewhere: RCSB PDB 6X9P · PDBe 6X9P · UniProt A1YIY3
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