MolNFT v1 · #169273 · protein
Crystal structure of C.DIFFICILE ribosyltransferase cdta in complex with pcl-phenylthiodadmeimma
6X6R: “Crystal structure of C.DIFFICILE ribosyltransferase cdta in complex with pcl-phenylthiodadmeimma”. X-ray diffraction, 2 ligands (4CT, AR6). MolNFT v1 #169273 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X6R
- Type
- protein
- Length
- 831 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F5B5W8
- Ligands
- 4CT, AR6
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 416 | — | F5B5W8 |
| B | — | protein | 415 | — | F5B5W8 |
Ligands and binding sites
- 4CT · (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl) methyl]-4-{[(4-chlorophenyl) sulfanyl]methyl}pyrrolidin-3-ol · ligand · 2 copies · chains A, B
- AR6 · [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X6R · Crystal structure of C.difficile ribosyltransferase CDTa in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F5B5W8
- Elsewhere: RCSB PDB 6X6R · PDBe 6X6R · UniProt F5B5W8
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