MolNFT v1 · #169260 · protein + DNA
Cryo-EM structure of piggybac transposase strand transfer complex (stc)
6X67: “Cryo-EM structure of piggybac transposase strand transfer complex (stc)”. Electron microscopy, 2 ligands (ZN, CA). MolNFT v1 #169260 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X67
- Type
- protein + DNA
- Length
- 1,116 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q283G1
- Ligands
- ZN, CA
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, D | — | protein | 478 | — | Q283G1 |
| E | — | dna | 37 | — | — |
| F | — | dna | 47 | — | — |
| G, L | — | dna | 8 | — | — |
| J | — | dna | 25 | — | — |
| K | — | dna | 35 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains C, D
- CA · Calcium ion · metal · 4 copies · chains C, K, E, D, F, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X67 · Cryo-EM structure of piggyBac transposase strand transfer complex (STC) · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q283G1
- Elsewhere: RCSB PDB 6X67 · PDBe 6X67 · UniProt Q283G1
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