MolNFT v1 · #169253 · protein
Peptide-bound structure of marinomonas primoryensis peptide-binding domain
6X5V: “Peptide-bound structure of marinomonas primoryensis peptide-binding domain”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #169253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X5V
- Type
- protein
- Length
- 506 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A1YIY3
- Ligands
- CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 502 | — | A1YIY3 |
| B | — | protein | 4 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 17 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X5V · Peptide-bound structure of Marinomonas primoryensis peptide-binding domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1YIY3
- Elsewhere: RCSB PDB 6X5V · PDBe 6X5V · UniProt A1YIY3
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