GL1X · GenesisL1 explorer

MolNFT v1 · #169228 · protein

Crystal structure of icos-L in complex with prezalumab and vnar domain

6X4T: “Crystal structure of icos-L in complex with prezalumab and vnar domain”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #169228 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6X4T
Type
protein
Length
1,512 residues
Chains
8
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
O75144
Ligands
NAG

Structure

x-ray diffraction · 8 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein210—O75144
B—protein224——
C—protein207—O75144
D—protein223——
E—protein213——
F—protein212——
G—protein118——
N—protein105——

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 13 copies · chains A, C, F
  • GOL · Glycerol · additive · 2 copies · chains A, B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6X4T · Crystal structure of ICOS-L in complex with Prezalumab and VNAR domain · the same entry in another collection · chain N against N, TM-score 1.00
  • O75144 · AlphaFold monomer V2.0 prediction for icos ligand (O75144) · a predicted model of the same protein · chain C against A, TM-score 0.93

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