MolNFT v1 · #16916 · protein

Family 1 B-glucosidase from thermotoga maritima

1OD0 · Beta-glucosidase a: “Family 1 B-glucosidase from thermotoga maritima”. X-ray diffraction, 4 pockets (best druggability 0.70). MolNFT v1 #16916 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1OD0
Type: protein
Length: 881 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-glucosidase a
EC: 3.2.1.21
UniProt: Q08638
Pockets: 4 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 44% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-glucosidase a (EC 3.2.1.21)	protein	435	44% helix, 19% strand	Q08638
B	Beta-glucosidase a (EC 3.2.1.21)	protein	446	44% helix, 19% strand	Q08638

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	481	0.70	0.80	48	empty
2	436	0.65	0.78	62	empty
3	96	0.34	0.74	15	empty
4	71	0.32	0.74	11	empty

Interfaces

1 interface between chains.

A–B · 473 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

1OD0 · Family 1 b-glucosidase from Thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
Q08638 · AlphaFold monomer V2.0 prediction for beta-glucosidase a (Q08638) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q08638
Elsewhere: RCSB PDB 1OD0 · PDBe 1OD0 · UniProt Q08638

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