MolNFT v1 · #169108 · protein
Inward-facing sodium-bound state of the glutamate transporter homologue gltph
6X13: “Inward-facing sodium-bound state of the glutamate transporter homologue gltph”. Electron microscopy, 1 ligand (6OU), 4 pockets (best druggability 0.63). MolNFT v1 #169108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X13
- Type
- protein
- Length
- 417 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate transporter homologue gltph
- Ligands
- 6OU
- Pockets
- 4 · best druggability 0.63
Structure
electron microscopy · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate transporter homologue gltph | protein | 417 | 77% helix, 0% strand | — |
Ligands and binding sites
- 6OU · [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 262 | 0.63 | 0.81 | 33 | empty |
| 2 | 212 | 0.58 | 0.80 | 28 | empty |
| 3 | 66 | 0.33 | 0.75 | 16 | empty |
| 4 | 57 | 0.30 | 0.75 | 15 | empty |
Compared structures
- 6X13 · Inward-facing sodium-bound state of the glutamate transporter homologue GltPh · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6X13 · PDBe 6X13
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