MolNFT v1 · #16879 · protein

Crystal structure of the complex of PDZ2 of syntenin with an interleukin 5 receptor alpha peptide.

1OBX · Syntenin 1: “Crystal structure of the complex of PDZ2 of syntenin with an interleukin 5 receptor alpha peptide.”. X-ray diffraction, 2 ligands (CO, SO4). MolNFT v1 #16879 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1OBX
Type: protein
Length: 78 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Syntenin 1; Interleukin 5 receptor alpha
UniProt: O00560, Q01344
Ligands: CO, SO4

Structure

x-ray diffraction · 2 distinct chains · 18% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Syntenin 1	protein	74	19% helix, 36% strand	O00560
B	Interleukin 5 receptor alpha	protein	4	0% helix, 25% strand	Q01344

Ligands and binding sites

CO · Cobalt (II) ion · metal · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 331 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

1OBX · Crystal structure of the complex of PDZ2 of syntenin with an interleukin 5 receptor alpha… · the same entry in another collection · chain A against A, TM-score 1.00
Q01344 · AlphaFold monomer V2.0 prediction for interleukin-5 receptor subunit alpha (Q01344) · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O00560
Every structure of UniProt Q01344
Elsewhere: RCSB PDB 1OBX · PDBe 1OBX · UniProt O00560 · UniProt Q01344

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