MolNFT v1 · #16872 · protein
Apocrustacyanin C1 crystals grown in space and earth using vapour diffusion geometry
1OBQ · Crustacyanin C1 subunit: “Apocrustacyanin C1 crystals grown in space and earth using vapour diffusion geometry”. X-ray diffraction, 6 pockets (best druggability 0.89). MolNFT v1 #16872 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1OBQ
- Type
- protein
- Length
- 361 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Crustacyanin C1 subunit
- UniProt
- P80029
- Pockets
- 6 · best druggability 0.89
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Crustacyanin C1 subunit | protein | 181 | 19% helix, 43% strand | P80029 |
| B | Crustacyanin C1 subunit | protein | 180 | 19% helix, 43% strand | P80029 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 466 | 0.89 | 0.96 | 63 | empty |
| 2 | 178 | 0.55 | 0.80 | 32 | empty |
| 3 | 113 | 0.55 | 0.84 | 17 | empty |
| 4 | 162 | 0.55 | 0.79 | 20 | empty |
| 5 | 51 | 0.29 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1174 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 1OBQ · Apocrustacyanin C1 crystals grown in space and earth using vapour diffusion geometry · the same entry in another collection · chain A against A, TM-score 1.00
- P80029 · AlphaFold monomer V2.0 prediction for crustacyanin-C1 subunit (P80029) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80029
- Elsewhere: RCSB PDB 1OBQ · PDBe 1OBQ · UniProt P80029
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