Research workbench
Apocrustacyanin C1 crystals grown in space and earth using vapour diffusion geometry
Analyse Apocrustacyanin C1 crystals grown in space and earth using vapour diffusion… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1OBQ
- Type
- protein
- Length
- 361 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Crustacyanin C1 subunit
- UniProt
- P80029
- Pockets
- 6 · best druggability 0.89
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Crustacyanin C1 subunit | protein | 181 | 19% helix, 43% strand | P80029 |
| B | Crustacyanin C1 subunit | protein | 180 | 19% helix, 43% strand | P80029 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 466 | 0.89 | 0.96 | 63 | empty |
| 2 | 178 | 0.55 | 0.80 | 32 | empty |
| 3 | 113 | 0.55 | 0.84 | 17 | empty |
| 4 | 162 | 0.55 | 0.79 | 20 | empty |
| 5 | 51 | 0.29 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1174 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 1OBQ · Apocrustacyanin C1 crystals grown in space and earth using vapour diffusion geometry · the same entry in another collection · chain A against A, TM-score 1.00
- P80029 · AlphaFold monomer V2.0 prediction for crustacyanin-C1 subunit (P80029) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80029
- Elsewhere: RCSB PDB 1OBQ · PDBe 1OBQ · UniProt P80029
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