MolNFT v1 · #168609 · RNA

V. cholerae glycine riboswitch with glycine models, 5.7 ångström resolution

6WLU · RNA (231-mer): “V. cholerae glycine riboswitch with glycine models, 5.7 ångström resolution”. Electron microscopy, 7 pockets (best druggability 0.74). MolNFT v1 #168609 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6WLU
Type: RNA
Length: 231 nucleotides
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (231-mer)
Pockets: 7 · best druggability 0.74

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (231-mer)	rna	231	—	—

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1110	0.74	0.78	68	empty
2	811	0.69	0.77	46	empty
3	393	0.52	0.73	22	empty
4	305	0.47	0.73	22	empty
5	288	0.46	0.73	22	empty

Compared structures

6WLU · V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6WLU · PDBe 6WLU

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