Research workbench
V. cholerae glycine riboswitch with glycine models, 5.7 ångström resolution
Analyse V. cholerae glycine riboswitch with glycine models, 5.7 ångström resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WLU
- Type
- RNA
- Length
- 231 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (231-mer)
- Pockets
- 7 · best druggability 0.74
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (231-mer) | rna | 231 | — | — |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1110 | 0.74 | 0.78 | 68 | empty |
| 2 | 811 | 0.69 | 0.77 | 46 | empty |
| 3 | 393 | 0.52 | 0.73 | 22 | empty |
| 4 | 305 | 0.47 | 0.73 | 22 | empty |
| 5 | 288 | 0.46 | 0.73 | 22 | empty |
Compared structures
- 6WLU · V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WLU · PDBe 6WLU
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