MolNFT v1 · #168546 · RNA

Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate

6WJS · RNA (112-mer): “Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate”. X-ray diffraction, 1 ligand (PO4), 4 pockets (best druggability 0.78). MolNFT v1 #168546 on GenesisL1: 3D structure, binding sites and…

PDB: 6WJS
Type: RNA
Length: 109 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (112-mer)
Ligands: PO4
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	RNA (112-mer)	rna	109	—	—

Ligands and binding sites

PO4 · Phosphate ion · ion · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1044	0.78	0.81	53	PO4
2	173	0.49	0.78	22	empty
3	105	0.36	0.75	14	empty
4	71	0.34	0.77	14	empty

Compared structures

6WJS · Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6WJS · PDBe 6WJS

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