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Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate

Analyse Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6WJS
Type: RNA
Length: 109 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (112-mer)
Ligands: PO4
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	RNA (112-mer)	rna	109	—	—

Ligands and binding sites

PO4 · Phosphate ion · ion · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1044	0.78	0.81	53	PO4
2	173	0.49	0.78	22	empty
3	105	0.36	0.75	14	empty
4	71	0.34	0.77	14	empty

Compared structures

6WJS · Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6WJS · PDBe 6WJS

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