MolNFT v1 · #168469 · protein + DNA
The crystal structure of the 2009/H1N1/CALIFORNIA pa endonuclease wild type bound to DNA oligomer tagc (cleaved ttagcatt, 5MM overnight DNA soak)
6WHM: “The crystal structure of the 2009/H1N1/CALIFORNIA pa endonuclease wild type bound to DNA oligomer tagc…”. X-ray diffraction, 3 ligands (MG, MN, SO4). MolNFT v1 #168469 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WHM
- Type
- protein + DNA
- Length
- 183 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A481PFF5, C6H0Y9
- Ligands
- MG, MN, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 179 | — | A0A481PFF5, C6H0Y9 |
| B | — | dna | 4 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WHM · The crystal structure of the 2009/H1N1/California PA endonuclease wild type bound to DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A481PFF5
- Every structure of UniProt C6H0Y9
- Elsewhere: RCSB PDB 6WHM · PDBe 6WHM · UniProt A0A481PFF5 · UniProt C6H0Y9
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