MolNFT v1 · #168213 · protein + DNA
Crystal structure of mouse DNMT1 in complex with ccg DNA
6W8W: “Crystal structure of mouse DNMT1 in complex with ccg DNA”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #168213 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6W8W
- Type
- protein + DNA
- Length
- 1,704 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P13864
- Ligands
- ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 829 | — | P13864 |
| B | — | protein | 827 | — | P13864 |
| C, E | — | dna | 12 | — | — |
| D, F | — | dna | 12 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W8W · Crystal structure of mouse DNMT1 in complex with CCG DNA · the same entry in another collection · chain F against F, TM-score 1.00
- P13864 · AlphaFold monomer V2.0 prediction for DNA (cytosine-5)-methyltransferase 1 (P13864) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13864
- Elsewhere: RCSB PDB 6W8W · PDBe 6W8W · UniProt P13864
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