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MolNFT v1 · #168189 · protein

K2P2.1 (trek-1):ML335 complex, 50 mm K+

6W87: “K2P2.1 (trek-1):ML335 complex, 50 mm K+”. X-ray diffraction, 7 ligands (D12, R16, LNK). MolNFT v1 #168189 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6W87
Type
protein
Length
556 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P97438
Ligands
D12, R16, LNK, Q6F, D10, K, CD

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein276—P97438
B—protein280—P97438

Ligands and binding sites

  • D12 · Dodecane · ligand · 4 copies · chains A, B
  • R16 · Hexadecane · ligand · 3 copies · chains B
  • LNK · Pentane · ligand · 3 copies · chains B
  • Q6F · N-[(2,4-dichlorophenyl)methyl]-4-[(methylsulfonyl) amino]benzamide · ligand · 2 copies · chains A, B
  • D10 · Decane · ligand · chains A
  • K · Potassium ion · metal · 5 copies · chains A, B
  • CD · Cadmium ion · metal · 4 copies · chains A, B
  • UND · Undecane · additive · 3 copies · chains B
  • OCT · N-octane · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6W87 · K2P2.1 (TREK-1):ML335 complex, 50 mM K+ · the same entry in another collection · chain A against A, TM-score 1.00
  • P97438 · AlphaFold monomer V2.0 prediction for potassium channel subfamily K member 2 (P97438) · a predicted model of the same protein · chain B against A, TM-score 0.94

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