Galectin-8N terminal domain in complex with methyl 3-O-[3-O- benzyloxy]-malonyl-beta-D-galactopyranoside

Structure

x-ray diffraction · 2 distinct chains · 3% helix, 53% strand (DSSP).

Ligands and binding sites

• SZS · methyl 3-O-[3-(benzyloxy)-3-oxopropanoyl]-beta-D-galactopyranoside · ligand · 2 copies · chains A, B
• CL · Chloride ion · ion · chains A
• EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
• PG4 · Tetraethylene glycol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Interfaces

1 interface between chains.

• A–B · 200 Ų buried · 8 hydrogen bonds · protein-protein

Compared structures

• 6W4Z · Galectin-8N terminal domain in complex with Methyl… · the same entry in another collection · chain A against A, TM-score 1.00
• O00214 · AlphaFold monomer V2.0 prediction for galectin-8 (O00214) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt O00214
• Elsewhere: RCSB PDB 6W4Z · PDBe 6W4Z · UniProt O00214