MolNFT v1 · #168078 · protein
Structure of TDP1 catalytic domain in complex with inhibitor XZ633P
6W4R: “Structure of TDP1 catalytic domain in complex with inhibitor XZ633P”. X-ray diffraction, 1 ligand (SZV). MolNFT v1 #168078 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6W4R
- Type
- protein
- Length
- 876 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NUW8
- Ligands
- SZV
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 438 | — | Q9NUW8 |
Ligands and binding sites
- SZV · 4-{[2-(2-hydroxyphenyl)imidazo[1,2-a]pyrazin-3-yl]amino}benzene-1,2-dicarboxylic acid · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 5 copies · chains A, B
- MPO · 3[N-morpholino]propane sulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W4R · Structure of Tdp1 catalytic domain in complex with inhibitor XZ633p · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NUW8
- Elsewhere: RCSB PDB 6W4R · PDBe 6W4R · UniProt Q9NUW8
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