MolNFT v1 · #168070 · protein + DNA

APE1 Y269A product complex with abasic DNA

6W4I: “APE1 Y269A product complex with abasic DNA”. X-ray diffraction, 1 ligand (MN). MolNFT v1 #168070 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6W4I
Type: protein + DNA
Length: 636 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P27695
Ligands: MN

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	276	—	P27695
D, C	—	dna	11	—	—
P, E	—	dna	10	—	—
V, F	—	dna	21	—	—

Ligands and binding sites

MN · Manganese (II) ion · metal · 2 copies · chains A, D, P, B, C, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6W4I · APE1 Y269A product complex with abasic DNA · the same entry in another collection · chain F against F, TM-score 1.00
P27695 · AlphaFold monomer V2.0 prediction for DNA-(apurinic or apyrimidinic site) endonuclease… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P27695
Elsewhere: RCSB PDB 6W4I · PDBe 6W4I · UniProt P27695

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