MolNFT v1 · #167965 · protein
Crystal structure of the carbohydrate recognition domain of the human macrophage galactose C-type lectin bound to the tumor-associated tn antigen
6W12: “Crystal structure of the carbohydrate recognition domain of the human macrophage galactose C-type lectin…”. X-ray diffraction, 4 ligands (A2G, CA, ZN). MolNFT v1 #167965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6W12
- Type
- protein
- Length
- 130 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8IUN9
- Ligands
- A2G, CA, ZN, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 130 | — | Q8IUN9 |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
- CA · Calcium ion · metal · 6 copies · chains A
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W12 · Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage… · the same entry in another collection · chain A against A, TM-score 0.99
- Q8IUN9 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 10 member a (Q8IUN9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IUN9
- Elsewhere: RCSB PDB 6W12 · PDBe 6W12 · UniProt Q8IUN9
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