MolNFT v1 · #167958 · protein
The crystal structure of the mutant nuclease domain of pyocin S8 with its cognate immunity protein
6W0V: “The crystal structure of the mutant nuclease domain of pyocin S8 with its cognate immunity protein”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #167958 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6W0V
- Type
- protein
- Length
- 207 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyocin S8; Bacteriocin immunity protein
- UniProt
- A0A1P8L021, A0A3S3UAR3
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyocin S8 | protein | 125 | 41% helix, 19% strand | A0A1P8L021 |
| B | Bacteriocin immunity protein | protein | 82 | 60% helix, 2% strand | A0A3S3UAR3 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.34 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 955 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6W0V · The Crystal Structure of the Mutant Nuclease Domain of Pyocin S8 with its Cognate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1P8L021
- Every structure of UniProt A0A3S3UAR3
- Elsewhere: RCSB PDB 6W0V · PDBe 6W0V · UniProt A0A1P8L021 · UniProt A0A3S3UAR3
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