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The crystal structure of the mutant nuclease domain of pyocin S8 with its cognate immunity protein
Analyse The crystal structure of the mutant nuclease domain of pyocin S8 with its… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W0V
- Type
- protein
- Length
- 207 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyocin S8; Bacteriocin immunity protein
- UniProt
- A0A1P8L021, A0A3S3UAR3
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyocin S8 | protein | 125 | 41% helix, 19% strand | A0A1P8L021 |
| B | Bacteriocin immunity protein | protein | 82 | 60% helix, 2% strand | A0A3S3UAR3 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.34 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 955 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6W0V · The Crystal Structure of the Mutant Nuclease Domain of Pyocin S8 with its Cognate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1P8L021
- Every structure of UniProt A0A3S3UAR3
- Elsewhere: RCSB PDB 6W0V · PDBe 6W0V · UniProt A0A1P8L021 · UniProt A0A3S3UAR3
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