MolNFT v1 · #167930 · protein
Crystal structure of HIV-1 BG505 ds-SOSIP.3MUT prefusion env trimer in complex with human antibodies 3H109L and 35O22 at 3.3 ångström
6W03: “Crystal structure of HIV-1 BG505 ds-SOSIP.3MUT prefusion env trimer in complex with human antibodies 3H109L…”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #167930 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6W03
- Type
- protein
- Length
- 1,229 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 124 | — | Q2N0S6 |
| D | — | protein | 128 | — | — |
| E | — | protein | 112 | — | — |
| G | — | protein | 427 | — | Q2N0S6 |
| H | — | protein | 227 | — | — |
| L | — | protein | 211 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 26 copies · chains G, B, D, H
- MAN · alpha-D-mannopyranose · sugar · 14 copies · chains D, E, H, L
- BMA · beta-D-mannopyranose · sugar · 5 copies · chains D, E, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W03 · Crystal Structure of HIV-1 BG505 DS-SOSIP.3mut Prefusion Env Trimer in Complex with Human… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6W03 · PDBe 6W03 · UniProt Q2N0S6
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