MolNFT v1 · #167926 · protein

Crystal structure of glucokinase from balamuthia mandrillaris in complex with glucose

6VZZ · BAMAA.19900.A: “Crystal structure of glucokinase from balamuthia mandrillaris in complex with glucose”. X-ray diffraction, 2 ligands (BGC, CA), 1 pocket (best druggability 0.71). MolNFT v1 #167926 on GenesisL1: 3D structure, binding…

PDB: 6VZZ
Type: protein
Length: 374 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: BAMAA.19900.A
Ligands: BGC, CA
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	BAMAA.19900.A	protein	374	43% helix, 21% strand	—

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · chains A
CA · Calcium ion · metal · 3 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	349	0.71	0.84	50	BGC

Compared structures

6VZZ · Crystal structure of glucokinase from Balamuthia mandrillaris in complex with glucose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6VZZ · PDBe 6VZZ

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