MolNFT v1 · #167905 · protein
N-terminal domain of mouse surfactant protein B (K46E/R51E mutant) with bound lipid
6VZD: “N-terminal domain of mouse surfactant protein B (K46E/R51E mutant) with bound lipid”. X-ray diffraction, 1 ligand (RXY). MolNFT v1 #167905 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VZD
- Type
- protein
- Length
- 320 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P50405
- Ligands
- RXY
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 79 | — | P50405 |
| E | — | protein | 85 | — | P50405 |
| B, C | — | protein | 78 | — | P50405 |
Ligands and binding sites
- RXY · (7Z,19R,22R)-25-amino-22-hydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphapentacos-7-en-19-yl (9Z)-octadec-9-enoate · ligand · 6 copies · chains A, E, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VZD · N-terminal domain of mouse surfactant protein B (K46E/R51E mutant) with bound lipid · the same entry in another collection · chain A against A, TM-score 1.00
- P50405 · AlphaFold monomer V2.0 prediction for pulmonary surfactant-associated protein B (P50405) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50405
- Elsewhere: RCSB PDB 6VZD · PDBe 6VZD · UniProt P50405
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