MolNFT v1 · #167893 · protein
Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2
6VYO: “Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2”. X-ray diffraction, 2 ligands (ZN, CL). MolNFT v1 #167893 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VYO
- Type
- protein
- Length
- 499 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC9
- Ligands
- ZN, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 124 | — | P0DTC9 |
| B, C, D | — | protein | 125 | — | P0DTC9 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, D, B, C
- CL · Chloride ion · ion · 4 copies · chains A, B, D, C
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 4 copies · chains A, D, B, C
- GOL · Glycerol · additive · 4 copies · chains B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VYO · Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC9
- Elsewhere: RCSB PDB 6VYO · PDBe 6VYO · UniProt P0DTC9
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